Rumex acetosa

Transposable elements

There are 2 pages with 15 entries

Name Description Protein homology Other info Source
Athila Athila (CL41) was absent on the X chromosome. Steflova et al 2013
Bianca Lineage of Ty1-copia. Steflova et al 2013
CACTA DNA transposon. Considerably smaller genome propor- tions. Steflova et al 2013
Chromovirus-CRM CL25 - gave specific centromeric signals on all chromosomes. CL42 - Y-accumulated CRM subfamily. Steflova et al 2013
Chromovirus-Tekay/Del CL22 and CL37, like Ty1-copia elements, were absent from both Y chromosomes. Steflova et al 2013
Copia superfamily Ty1 Copia. Steflova et al 2013
DOP-47 Repetitive DNA sequence isolated from the microdissection of sex chromosomes. A higher homology was found between DOP-47 and DOP-61 and Ty3-gypsy-like polyproteins of LTR retroelements. No homology was detected among the isolated R. acetosa retroelements at the DNA level. Mariotti et al 2006
DOP-60 Repetitive DNA sequence isolated from the microdissection of sex chromosomes. Homologous at the amino-acid level with reverse transcriptase of plant non-LTR retrotransposons,and Ty1-copia-like polyproteins of LTR retroelements, respectively. Mariotti et al 2006
DOP-61 Repetitive DNA sequence isolated from the microdissection of sex chromosomes. A higher homology was found between DOP-47 and DOP-61 and Ty3-gypsy-like polyproteins of LTR retroelements. No homology was detected among the isolated R. acetosa retroelements at the DNA level. Mariotti et al 2006
DOP-8 Repetitive DNA sequence isolated from the microdissection of sex chromosomes. Homologous at the amino-acid level with reverse transcriptase of plant non-LTR retrotransposons,and Ty1-copia-like polyproteins of LTR retroelements, respectively. Mariotti et al 2006

Sex-chrom database 2020