Silene latifolia
Transposable elements
There are 2 pages with 13 entries
Name | Description | Protein homology | Other info | Source |
---|---|---|---|---|
Angela | Ty1-copia retrotransposon from lineage TORK. | https://doi.org/10.1186/s12864-018-4547-7 | ||
Athila | Gypsy element. Is almost missing in the Y chromosome. One of the most abundant TEs in the S. latifolia genome. | https://doi.org/10.1159/000362142 | ||
LINE | LINEs - long interspersed nuclear elements, non-LTR retrotransposons terminating at the 39 end with a poly(A) tract. | https://doi.org/10.1371/journal.pone.0031898 | ||
MITE | Miniature inverted-repeat transposable element, non-autonomous DNA transposon. | https://doi.org/10.1534/genetics.107.081745 | ||
Ogre | Ty3-gypsy long terminal repeat. Three Ogre families ubiquitous in the S. latifolia genome. One family is nearly absent on the Y chromosome. Genome size expanded due to amplification of this giant gypsy- type retrotransposon. | https://doi.org/10.1111/nph.12669 | ||
Peabody | Ty3-gypsy element bearing chromodomain integrase, from the Chromoviridae branch. | https://doi.org/10.1371/journal.pone.0031898 | ||
Retand | Belongs to gypsy-like family. They are consisting of a non-autonomous element Retand-1 and its autonomous partner Retand-2. They share similar long terminal repeat (LTR) sequences. Missing on subtelomere of short arm of Y. | https://doi.org/10.1007/s00438-006-0140-x | ||
Thelma | Tag2-like transposase belonging to hAT superfamily of DNA transposons, branching with the Ac/Tam3 clade. | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462803/ | ||
Thelma 13 | Tag2-like transposase belonging to hAT superfamily of DNA transposons, branching with the Ac/Tam3 clade. Functional, likely to be linked to the X or autosomes. | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462803/ | ||
Thelma 7 | Tag2-like transposase belonging to hAT superfamily of DNA transposons, branching with the Ac/Tam3 clade. Y-linked copy, has acquired several mutations, large indels disruptin coding region (assumed to be connected to the Y degradation). | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462803/ |
Sex-chrom database 2021-2022